Here’s a list of publications that have used Marbits for computing analyses.

A bibTex version is available here.

  • Bergauer, K., Fernandez-Guerra, A., Garcia, J. A. L., Sprenger, R. R., Stepanauskas, R., Pachiadaki, M. G., et al. (2018). Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proceedings of the National Academy of Sciences, 115(3), E400–E408.

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  • Brum, J. R., Ignacio-Espinoza, J. C., Roux, S., Doulcier, G., Acinas, S. G., Alberti, A., et al. (2015). Patterns and ecological drivers of ocean viral communities. Science, 348(6237), 1261498–1261498.

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  • Cabello, A. M., Cornejo-Castillo, F. M., Raho, N., Blasco, D., Vidal, M., Audic, S., et al. (2015). Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis. The ISME Journal, 10(3), 693–706.

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  • Canals, O., Massana, R., Riera, J. L., Balagué, V., & Salvadó, H. (2017). Microeukaryote community in a partial nitritation reactor prior to anammox and an insight into the potential of ciliates as performance bioindicators. New BIOTECHNOLOGY, 1–10.

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  • de Vargas, C., Audic, S., Henry, N., Decelle, J., Mahé, F., Logares, R., et al. (2015). Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science, 348(6237), 1261605–1261605.

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  • Ferrera, I., Arístegui, J., González, J. M., Montero, M. F., Fraile-Nuez, E., & Gasol, J. M. (2015a). Transient changes in bacterioplankton communities induced by the submarine volcanic eruption of El Hierro (Canary Islands). PLoS ONE, 10(2), e0118136.

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  • Ferrera, I., Banta, A. B., & Reysenbach, A.-L. (2014a). Spatial patterns of Aquificales in deep-sea vents along the Eastern Lau Spreading Center (SW Pacific). Systematic and Applied Microbiology, 37(6), 442–448.

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  • Ferrera, I., Borrego, C. M., Salazar, G., & Gasol, J. M. (2014b). Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing of pufM gene. Environmental Microbiology, 16(9), 2953–2965.

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  • Ferrera, I., Giner, C. R., Reñé, A., Camp, J., Massana, R., Gasol, J. M., & Garcés, E. (2016). Evaluation of Alternative High-Throughput Sequencing Methodologies for the Monitoring of Marine Picoplanktonic Biodiversity Based on rRNA Gene Amplicons. Frontiers in Marine Science, 3(440), 8966.

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  • Ferrera, I., Mas, J., Taberna, E., Sanz, J., & Sánchez, O. (2015b). Biological support media influence the bacterial biofouling community in reverse osmosis water reclamation demonstration plants. Biofouling, 31(2), 173–180.

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  • Fridman, S., Flores-Uribe, J., Larom, S., Alalouf, O., Liran, O., Yacoby, I., et al. (2017). A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells. Nature Microbiology, 2(10), 1350–1357.

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  • Guerrero-Feijóo, E., Nieto-Cid, M., Sintes, E., Dobal-Amador, V., Hernando-Morales, V., Álvarez, M., et al. (2017). Optical properties of dissolved organic matter relate to different depth-specific patterns of archaeal and bacterial community structure in the North Atlantic Ocean. FEMS Microbiology Ecology, 93(1).

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  • Lima-Mendez, G., Faust, K., Henry, N., Decelle, J., Colin, S., Carcillo, F., et al. (2015). Ocean plankton. Determinants of community structure in the global plankton interactome. Science, 348(6237), 1262073–1262073.

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  • Logares, R., Audic, S., Bass, D., Bittner, L., Boutte, C., Christen, R., et al. (2014a). Patterns of rare and abundant marine microbial eukaryotes. Current Biology : CB, 24(8), 813–821.

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  • Logares, R., Audic, S., Santini, S., Pernice, M. C., de Vargas, C., & Massana, R. (2012). Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. The ISME Journal, 6(10), 1823–1833.

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  • Logares, R., Lindström, E. S., Langenheder, S., Logue, J. B., Paterson, H., Laybourn-Parry, J., et al. (2013). Biogeography of bacterial communities exposed to progressive long-term environmental change. The ISME Journal, 7(5), 937–948.

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  • Logares, R., Mangot, J.-F., & Massana, R. (2015). Rarity in aquatic microbes: placing protists on the map. Research in Microbiology, 166(10), 831–841.

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  • Logares, R., Sunagawa, S., Salazar, G., Cornejo-Castillo, F. M., Ferrera, I., Sarmento, H., et al. (2014b). Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environmental Microbiology, 16(9), 2659–2671.

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  • Mangot, J.-F., Logares, R., Sánchez, P., Latorre, F., Seeleuthner, Y., Mondy, S., et al. (2017). Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Scientific Reports, 7, 1–12.

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  • Massana, R., del Campo, J., Sieracki, M. E., Audic, S., & Logares, R. (2014). Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles. The ISME Journal, 8(4), 854–866.

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  • Massana, R., Gobet, A., Audic, S., Bass, D., Bittner, L., Boutte, C., et al. (2015). Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing. Environmental Microbiology, 17(10), 4035–4049.

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  • Muthusamy, S., Lundin, D., Mamede Branca, R. M., Baltar, F., González, J. M., Lehtiö, J., & Pinhassi, J. (2017). Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria. Environmental Microbiology, 19(6), 2301–2319.

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  • Palovaara, J., Akram, N., Baltar, F., Bunse, C., Forsberg, J., Pedrós-Alió, C., et al. (2014). Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria. Proceedings of the National Academy of Sciences, 111(35), E3650–8.

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  • Pernice, M. C., Giner, C. R., Logares, R., Perera-Bel, J., Acinas, S. G., Duarte, C. M., et al. (2015). Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans. The ISME Journal, 10(4), 945–958.

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  • Pernice, M. C., Logares, R., Guillou, L., & Massana, R. (2013). General patterns of diversity in major marine microeukaryote lineages. PLoS ONE, 8(2), e57170.

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  • Rengefors, K., Logares, R., & Laybourn-Parry, J. (2012). Polar lakes may act as ecological islands to aquatic protists. Molecular Ecology, 21(13), 3200–3209.

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  • Rengefors, K., Logares, R., Laybourn-Parry, J., & Gast, R. J. (2015). Evidence of concurrent local adaptation and high phenotypic plasticity in a polar microeukaryote. Environmental Microbiology, 17(5), 1510–1519.

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  • Rodríguez-Martínez, R., Rocap, G., Logares, R., Romac, S., & Massana, R. (2012). Low evolutionary diversification in a widespread and abundant uncultured protist (MAST-4). Molecular Biology and Evolution, 29(5), 1393–1406.

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  • Roitman, S., Flores-Uribe, J., Philosof, A., Knowles, B., Rohwer, F., Ignacio-Espinoza, J. C., et al. (2015). Closing the gaps on the viral photosystem-I psaDCAB gene organization. Environmental Microbiology, 17(12), 5100–5108.

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  • Royo-Llonch, M., Ferrera, I., Cornejo-Castillo, F. M., Sánchez, P., Salazar, G., Stepanauskas, R., et al. (2017). Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes. Frontiers in Microbiology, 8, 265–14.

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  • Ruiz-González, C., Salazar, G., Logares, R., Proia, L., Gasol, J. M., & Sabater, S. (2015). Weak Coherence in Abundance Patterns Between Bacterial Classes and Their Constituent OTUs Along a Regulated River. Frontiers in Microbiology, 6(614), 798.

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  • Salazar, G., Cornejo-Castillo, F. M., Benítez-Barrios, V., Fraile-Nuez, E., lvarez-Salgado, X. A., Duarte, C. M., et al. (2015a). Global diversity and biogeography of deep-sea pelagic prokaryotes. The ISME Journal, 10(3), 1–13.

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  • Salazar, G., Cornejo-Castillo, F. M., Borrull, E., Díez-Vives, C., Lara, E., Vaqué, D., et al. (2015b). Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes. Molecular Ecology, 24(22), 5692–5706.

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  • Sebastián, M., Smith, A. F., González, J. M., Fredricks, H. F., Van Mooy, B., Koblížek, M., et al. (2016). Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10(4), 968–978.

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  • Sebastián, M., Auguet, J.-C., Restrepo-Ortiz, C. X., Sala, M. M., Marrasé, C., & Gasol, J. M. (2017). Deep ocean prokaryotic communities are remarkably malleable when facing long-term starvation. Environmental Microbiology, 20(2), 713–723.

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  • Sunagawa, S., Coelho, L. P., Chaffron, S., Kultima, J. R., Labadie, K., Salazar, G., et al. (2015). Ocean plankton. Structure and function of the global ocean microbiome. Science, 348(6237), 1261359–1261359.

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  • Uria, N., Ferrera, I., & Mas, J. (2017). Electrochemical performance and microbial community profiles in microbial fuel cells in relation to electron transfer mechanisms. BMC Microbiology, 17(1), 208.

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  • Vik, U., Logares, R., Blaalid, R., Halvorsen, R., Carlsen, T., Bakke, I., et al. (2013). Different bacterial communities in ectomycorrhizae and surrounding soil. Scientific Reports, 3, 3471.

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  • Villar, E., Farrant, G. K., Follows, M., Garczarek, L., Speich, S., Audic, S., et al. (2015). Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237), 1261447–1261447.

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